housw/phyloutils

master

phyloutils

Grade	Name	Complexity	Churn	Issues
A	build\lib\phyloutils\__init__.py		1	-
A	build\lib\phyloutils\main.py	14	2	-
A	build\lib\phyloutils\subcommands\AMPHORE2HmmMarkerScanner.py	29	1	5
A	build\lib\phyloutils\subcommands\__init__.py	8	1	-
A	build\lib\phyloutils\subcommands\concatMarkersforEachGenome.py	14	1	-
A	build\lib\phyloutils\subcommands\convertMSFtoPhylip.py	7	1	-
A	build\lib\phyloutils\subcommands\extractGenbankGenomicFna.py	11	1	1
A	build\lib\phyloutils\subcommands\extractGenbankProteins.py	10	1	1
A	build\lib\phyloutils\subcommands\generateShortNameTable.py	9	1	-
A	build\lib\phyloutils\subcommands\getGenomesFromGenbank.py	54	2	7
A	build\lib\phyloutils\subcommands\mergeEachMarkerProteinSet.py	13	1	1
A	build\lib\phyloutils\subcommands\mergeGenbankGenomes.py	9	1	1
A	build\lib\phyloutils\subcommands\mergeMultipleFastaRecords.py	3	1	-
A	build\lib\phyloutils\subcommands\mergerRNASet.py	23	1	2
A	build\lib\phyloutils\subcommands\renameFastaFile.py	9	1	3
A	build\lib\phyloutils\subcommands\replaceNameInTree.py	17	1	1
A	build\lib\phyloutils\subcommands\rnammerMarkerScanner.py	9	1	2
A	build\lib\phyloutils\subcommands\runHmmsearch.py	14	1	1
A	build\lib\phyloutils\subcommands\runMSAonMarkers.py	6	1	2
A	build\lib\phyloutils\subcommands\runPartitionFinderProtein.py	7	1	3