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master
MiCoNE
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  • 489 issues
  • 1 pull request
  • 125 files
  • 1 active branch

CodeFactor Rating B-

  • {{format.Name}}
Grade
Name
Complexity
Churn
Issues
A
micone\cli.py
28 9 3
A
micone\pipelines\templates\sequence_processing\trimming\trimming_paired.R
3 -
A
micone\pipelines\templates\denoise_cluster\chimera_checking\remove_chimeras.R
3 2
A
micone\pipelines\templates\tax_assignment\assign\add_md2biom.py
8 3 3
A
micone\pipelines\__init__.py
2 1
A
micone\pipelines\templates\tax_assignment\assign\assign_taxonomy_naivebayes.sh
2 -
A
micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_closed_reference.sh
3 -
A
micone\pipelines\templates\tax_assignment\assign\import_references.sh
1 -
A
.pre-commit-config.yaml
3 -
A
micone\pipelines\workflows\full\run.sh
2 -
A
micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_open_reference.sh
3 -
A
micone\pipelines\workflows\op_ni\run.sh
1 -
A
micone\pipelines\envs\micone-cozine\env.yml
2 -
A
micone\pipelines\envs\micone-flashweave\post_install.sh
3 1
A
micone\pipelines\templates\network_inference\bootstrap\calculate_pvalues.sh
3 1
A
micone\pipelines\templates\network_inference\bootstrap\filter.py
5 1 4
A
micone\logging\__init__.py
1 1
A
micone\pipelines\envs\micone-harmonies\env.yml
2 -
A
micone\pipelines\templates\network_inference\bootstrap\resample.sh
2 -
A
micone\pipelines\templates\network_inference\correlation\pearson.py
7 2 5
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