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MiCoNE
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micone\pipelines\templates\denoise_cluster\chimera_checking\export_files.sh
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micone\pipelines\templates\denoise_cluster\chimera_checking\remove_chimeras.R
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micone\pipelines\templates\sequence_processing\trimming\trimming_paired.R
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micone\pipelines\templates\sequence_processing\trimming\trimming_single.R
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micone\pipelines\__init__.py
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micone\pipelines\templates\denoise_cluster\chimera_checking\remove_chimeras.sh
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micone\pipelines\templates\tax_assignment\assign\assign_taxonomy_blast.sh
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micone\pipelines\templates\tax_assignment\assign\assign_taxonomy_naivebayes.sh
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micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_closed_reference.sh
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micone\pipelines\templates\tax_assignment\assign\import_reads.sh
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.pre-commit-config.yaml
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.sourcery.yaml
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micone\conversion\__init__.py
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micone\pipelines\templates\tax_assignment\assign\import_references.sh
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micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_de_novo.sh
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micone\pipelines\templates\tax_assignment\assign\train_classifier.sh
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micone\pipelines\workflows\full\run.sh
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micone\pipelines\templates\denoise_cluster\otu_assignment\cluster_open_reference.sh
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micone\pipelines\workflows\ni\run.sh
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micone\pipelines\workflows\op_ni\run.sh
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