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master
MiCoNE
489
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pull requests
125
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CodeFactor Rating B-
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Grade
Name
Complexity
Churn
Issues
A
micone\pipelines\templates\denoise_cluster\chimera_checking\remove_chimeras.R
3
2
A
micone\setup\initialize.py
4
3
2
A
micone\conversion\network_converter.py
1
2
2
A
micone\pipelines\templates\otu_processing\transform\normalize_filter.py
4
4
3
A
micone\cli.py
28
9
3
A
micone\pipelines\templates\denoise_cluster\chimera_checking\create_seqtable.py
3
1
3
A
micone\pipelines\templates\tax_assignment\assign\add_md2biom.py
8
3
3
A
tests\data\examples\networks\copy_data.py
12
1
3
A
tests\conversion\test_taxmetadata_converter.py
1
2
3
A
micone\pipelines\templates\network_inference\bootstrap\filter.py
5
1
4
A
micone\pipelines\templates\network_inference\network\create_consensus.py
2
5
5
A
micone\pipelines\templates\network_inference\network\make_network_with_pvalue.py
3
6
5
A
micone\pipelines\templates\otu_processing\transform\fork.py
3
5
5
A
micone\pipelines\templates\denoise_cluster\otu_assignment\make_biom_repseqs.py
6
4
5
A
micone\pipelines\templates\network_inference\correlation\pearson.py
7
2
5
A
micone\pipelines\templates\network_inference\correlation\spearman.py
7
2
5
A
micone\pipelines\templates\network_inference\network\make_network_without_pvalue.py
3
8
6
A
micone\pipelines\templates\otu_processing\transform\group.py
1
2
6
A
micone\pipelines\templates\sequence_processing\trimming\quality_analysis_paired.py
25
1
6
A
micone\pipelines\templates\sequence_processing\trimming\quality_analysis_single.py
25
1
6
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