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Grade
Name
Complexity
Churn
Issues
A
R\addGeneAbundance.R
 1 -
A
_pkgdown.yml
 1 -
A
R\L2FC.R
 1 -
A
R\checkPATRICSimple.R
 2 -
A
R\setMetadata.R
 2 1
A
R\calcGF.R
 2 1
A
R\loadmetaSNV.R
 2 -
A
R\convertWideToMaf.R
 3 3
A
R\rankComponents.R
 3 -
A
R\loadInStrain.R
 4 -
A
.github\workflows\R-CMD-check.yaml
 4 -
A
R\plotMAF.R
 4 1
A
R\combineGenes.R
 4 1
A
R\doL0.R
 4 -
A
R\combineSeqs.R
 4 1
A
R\plotCoverage.R
 4 -
A
R\compareGenes.R
 4 -
A
R\checkPATRIC.R
 5 -
A
R\InStrainFuncs.R
 5 -
A
R\plotDist.R
 5 1