merenlab/anvio

master

anvio

Grade	Name	Complexity	Churn	Issues
A	anvio\drivers\fasttree.py	10	2	-
A	anvio\cli\permute_trnaseq_seeds.py	18	2	-
A	anvio\cli\delete_collection.py	4	2	-
A	anvio\cli\filter_fasta_by_blast.py	8	2	1
A	anvio\cli\plot_trnaseq.py	1	2	-
A	anvio\cli\find_misassemblies.py	26	2	1
A	anvio\cli\process_genbank_metadata.py	1	2	-
A	anvio\drivers\binsanity.py	3	2	-
A	anvio\cli\gen_CPR_classifier.py	4	2	-
A	anvio\cli\push.py	1	2	-
A	anvio\cli\reformat_bam.py	10	2	7
A	anvio\cli\gen_defense_finder_models_to_hmm_directory.py	7	2	-
A	anvio\cli\reformat_fasta.py	83	2	5
A	anvio\cli\report_circularity.py	1	2	-
A	anvio\cli\report_inversions.py	1	2	1
A	anvio\cli\report_linkmers.py	1	2	-
A	anvio\agglomeration.py	39	2	1
A	anvio\cli\run_cazymes.py	1	2	-
A	anvio\cli\run_eggnog_mapper.py	5	2	-
A	anvio\cli\as_markdown.py	20	2	1