jmmut/eva-pipeline

develop

eva-pipeline

Grade	Name	Complexity	Churn	Issues
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\UnwindingItemReader.java	6	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\AnnotationLoaderStep.java	0	14	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\VariantsMongoReader.java	10	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\configuration\readers\VariantAnnotationReaderConfiguration.java	1	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\VcfReader.java	3	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\flows\AnnotationFlow.java	1	8	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\writers\StatisticsMongoWriter.java	1	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\configuration\readers\VcfReaderConfiguration.java	4	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\writers\VariantSourceEntityMongoWriter.java	2	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\flows\AnnotationFlowOptional.java	1	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\writers\VepAnnotationMongoWriter.java	15	6	-
A	src\main\java\uk\ac\ebi\eva\pipeline\configuration\writers\VariantAnnotationWriterConfiguration.java	1	4	-
A	src\main\java\uk\ac\ebi\eva\commons\models\converters\data\VariantSourceEntryToDBObjectConverter.java	14	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\GenotypedVcfJob.java	0	11	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\CalculateStatisticsStep.java	2	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\AnnotationMetadataStep.java	2	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\flows\ParallelStatisticsAndAnnotationFlow.java	0	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\deciders\SkipStepDecider.java	3	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\deciders\EmptyVepOutputDecider.java	7	1	-
A	src\main\java\uk\ac\ebi\eva\commons\models\metadata\AnnotationMetadata.java	7	1	-