jmmut/eva-pipeline

develop

eva-pipeline

Grade	Name	Complexity	Churn	Issues
A	src\test\java\uk\ac\ebi\eva\pipeline\io\writers\VepAnnotationMongoWriterTest.java	16	14	-
A	src\main\java\uk\ac\ebi\eva\commons\models\converters\data\VariantToDBObjectConverter.java	17	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\PedReader.java	17	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\VcfHeaderReader.java	17	5	-
A	src\test\java\uk\ac\ebi\eva\test\utils\JobTestUtils.java	19	11	-
A	src\main\java\uk\ac\ebi\eva\commons\models\data\VariantAnnotation.java	19	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\AnnotationParameters.java	20	6	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\MongoDbCursorItemReader.java	21	4	-
A	src\main\java\uk\ac\ebi\eva\commons\models\data\VariantSourceEntity.java	22	2	1
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\ParametersValidatorUtil.java	27	3	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\mappers\VariantVcfEVSFactory.java	31	2	2
A	src\main\java\uk\ac\ebi\eva\pipeline\io\mappers\AnnotationLineMapper.java	33	5	-
A	src\main\java\uk\ac\ebi\eva\commons\models\converters\data\VariantAnnotationToDBObjectConverter.java	35	1	1
A	src\test\java\uk\ac\ebi\eva\utils\EvaCommandLineBuilder.java	36	6	-
A	src\main\java\uk\ac\ebi\eva\commons\models\data\VariantSourceEntry.java	37	1	2
A	src\main\java\uk\ac\ebi\eva\commons\models\converters\data\DBObjectToVariantAnnotationConverter.java	38	1	-
A	src\test\java\uk\ac\ebi\eva\pipeline\parameters\validation\ParametersValidatorUtilTest.java	38	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\runner\EvaPipelineJobLauncherCommandLineRunner.java	41	2	-
A	src\main\java\uk\ac\ebi\eva\pipeline\model\PopulationStatistics.java	47	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\mappers\VariantVcfExacFactory.java	48	2	2