jmmut/eva-pipeline

develop

eva-pipeline

Grade	Name	Complexity	Churn	Issues
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputStudyNameValidator.java	1	2	-
A	src\main\java\uk\ac\ebi\eva\utils\MongoDBHelper.java	13	12	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\processors\VariantNoAlternateFilterProcessor.java	3	1	-
A	src\main\java\uk\ac\ebi\eva\utils\URLHelper.java	8	5	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\AnnotationFlatFileReader.java	2	3	-
A	src\test\java\uk\ac\ebi\eva\commons\models\converters\data\VariantAnnotationToDBObjectConverterTest.java	2	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\tasklets\FileLoaderStep.java	1	4	-
A	src\test\java\uk\ac\ebi\eva\commons\models\converters\data\VariantStatsToDBObjectConverterTest.java	0	1	-
A	src\main\java\uk\ac\ebi\eva\commons\models\data\Variant.java	67	4	-
A	src\test\java\uk\ac\ebi\eva\pipeline\io\VepProcessTest.java	0	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\tasklets\IndexesGeneratorStep.java	1	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\io\readers\MongoDbCursorItemReader.java	21	4	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputStudyTypeValidator.java	2	2	-
A	src\main\java\uk\ac\ebi\eva\pipeline\configuration\writers\VepAnnotationFileWriterConfiguration.java	1	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\GenotypedVcfJob.java	0	11	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputVcfAggregationMappingPathValidator.java	1	2	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputVcfAggregationValidator.java	2	2	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputVcfIdValidator.java	1	2	-
A	src\main\java\uk\ac\ebi\eva\pipeline\parameters\validation\InputVcfValidator.java	1	1	-
A	src\main\java\uk\ac\ebi\eva\pipeline\jobs\steps\tasklets\PopulationStatisticsLoaderStep.java	12	3	-