master
BrainFANS
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Grade
Name
Complexity
Churn
Issues
D
array\DNAm\preprocessing\calcQCMetrics.r
 17 7
A
array\DNAm\preprocessing\jobSubmission\1_runDNAmQC.sh
 17 -
C
array\DNAm\preprocessing\clusterCellTypes.r
 15 5
C
array\DNAm\preprocessing\loadDataGDS.r
 14 5
A
array\DNAm\config\config.example.r
 13 -
A
array\DNAm\preprocessing\normalisation.r
 12 -
B
array\DNAm\preprocessing\CETYGOdeconvolution.r
 8 5
A
array\DNAm\analysis\methodsDevelopment\jobSubmission\simulateCellSpecificEWAS.sh
 8 -
A
sequencing\ATACSeq\jobSubmission\batchFormatSexChrs.sh
 6 1
A
array\SNPArray\jobSubmission\runFormatting1000G.sh
 6 -
A
array\DNAm\analysis\QTLs\jobSubmission\prepQTLData.sh
 6 -
A
array\DNAm\analysis\neuralCellComposition\jobSubmission\testCTModels.sh
 6 -
A
array\DNAm\analysis\QTLs\jobSubmission\runQTLs.sh
 6 -
A
array\DNAm\analysis\EWAS\jobSubmission\runEWAS.sh
 6 -
B
array\DNAm\analysis\methodsDevelopment\simulateCellSpecificEWAS.r
 6 8
B
array\DNAm\analysis\EWAS\summariseDMPs.r
 5 5
A
array\DNAm\analysis\methodsDevelopment\compareNormalisation.r
 5 1
A
array\SNPArray\jobSubmission\liftoverImputation.sh
 5 -
A
array\SNPArray\jobSubmission\formatForQTLs.sh
 5 -
A
array\DNAm\preprocessing\checkRconfigFile.r
 5 -