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GeneLab_Data_Processing
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\mapping.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\megahit.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\metabat.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\prodigal.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\qc.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\combine-all-gene-tables.py
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\combine-benchmarks.sh
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\combine-gene-level-coverages-annots-and-tax-per-group.py
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\format-contig-tax-classifications.sh
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\format-gene-tax-classifications.sh
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\generate-assembly-based-overview-table.sh
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\parse-MAG-annots.py
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\scripts\swap-MAG-IDs.py
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Metagenomics\Remove_human_reads_from_raw_data\Workflow_Documentation\SW_MGRemoveHumanReads-A\workflow_code\config.yaml
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Metagenomics\Remove_human_reads_from_raw_data\Workflow_Documentation\SW_MGRemoveHumanReads-A\workflow_code\envs\kraken2.yaml
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RNAseq\GLDS_Processing_Scripts\GLDS-101\GLDS_version_2\04-05-DESeq2_NormCounts_DGE\deseq2_normcounts_noERCC_DGE_vis.R
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RNAseq\GLDS_Processing_Scripts\GLDS-102\GLDS_version_2\04-05-DESeq2_NormCounts_DGE\deseq2_normcounts_noERCC_DGE_vis.R
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RNAseq\GLDS_Processing_Scripts\GLDS-104\GLDS_version_2\04-05-DESeq2_NormCounts_DGE\deseq2_normcounts_noERCC_DGE_vis.R
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RNAseq\GLDS_Processing_Scripts\GLDS-120\04-05-DESeq2_NormCounts_DGE\deseq2_normcounts_noERCC_DGE_vis.R
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RNAseq\GLDS_Processing_Scripts\GLDS-137\04-05-DESeq2_NormCounts_DGE\deseq2_normcounts_noERCC_DGE_vis.R
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