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GeneLab_Data_Processing
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Amplicon\Illumina\GLDS_Processing_Scripts\GLDS-280\GLDS_version_2\full-R-processing.R
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\config.yaml
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\envs\R.yaml
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\envs\cutadapt.yaml
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\envs\qc.yaml
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\scripts\Illumina-PE-R-processing.R
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\scripts\Illumina-R-processing.R
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\scripts\Illumina-SE-R-processing.R
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Amplicon\Illumina\Workflow_Documentation\SW_AmpIllumina-A\workflow_code\scripts\combine-benchmarks.sh
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GeneLab_Reference_Annotations\Workflow_Documentation\GL_RefAnnotTable\workflow_code\GL-DPPD-7110_build-genome-annots-tab.R
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Metagenomics\Estimate_host_reads_in_raw_data\Workflow_Documentation\SW_MGEstHostReads\workflow_code\config.yaml
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Metagenomics\Estimate_host_reads_in_raw_data\Workflow_Documentation\SW_MGEstHostReads\workflow_code\envs\kraken2.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\config.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\bit.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\cat.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\checkm.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\gtdb-tk.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\humann3.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\keggdecoder.yaml
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Metagenomics\Illumina\Workflow_Documentation\SW_MGIllumina\workflow_code\envs\kofamscan.yaml
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