2lambda123/cbioportal

master

cbioportal

Grade	Name	Complexity	Churn	Issues
A	persistence\persistence-mybatis\src\main\java\org\cbioportal\persistence\mybatis\SecurityMyBatisRepository.java	8	1	-
A	core\src\main\java\org\mskcc\cbio\portal\scripts\FilterCases.java	16	1	-
A	persistence\persistence-mybatis\src\main\java\org\cbioportal\persistence\mybatis\SignificantCopyNumberRegionMyBatisRepository.java	3	1	-
A	core\src\main\scripts\all-su2c.sh		1	-
A	persistence\persistence-mybatis\src\main\java\org\cbioportal\persistence\mybatis\SignificantlyMutatedGeneMyBatisRepository.java	2	1	-
A	core\src\main\java\org\mskcc\cbio\portal\model\Geneset.java	14	1	-
A	core\src\main\scripts\calculateMutationFrequencies.py		1	2
A	core\src\test\java\org\mskcc\cbio\portal\mut_diagram\TestSequence.java	17	1	-
A	core\src\test\java\org\mskcc\cbio\portal\oncoPrintSpecLanguage\TestCallOncoPrintSpecParser.java	1	1	1
A	core\src\main\java\org\mskcc\cbio\portal\scripts\GenerateMutationData.java	29	1	-
A	core\src\main\java\org\mskcc\cbio\portal\model\ProfileData.java	17	1	-
A	core\src\test\java\org\mskcc\cbio\portal\oncoPrintSpecLanguage\TestOncoPrintSpecificationInParser.java	57	1	2
A	core\src\test\java\org\mskcc\cbio\portal\oncoPrintSpecLanguage\TestOncoPrintSpecificationLibrary.java	41	1	6
A	core\src\test\java\org\mskcc\cbio\portal\pancancer\LargeTestSetGenerator.java	37	1	1
A	core\src\main\java\org\mskcc\cbio\portal\scripts\ImportTimelineData.java	19	1	1
A	core\src\test\java\org\mskcc\cbio\portal\pancancer\TestPanCancerStudySummaryImport.java	12	1	1
A	core\src\test\java\org\mskcc\cbio\portal\scripts\TestCutInvalidCases.java	5	1	-
A	core\src\main\java\org\mskcc\cbio\portal\model\ProfileDataSummary.java	57	1	2
A	core\src\main\java\org\mskcc\cbio\portal\scripts\ImportTypesOfCancers.java	20	1	1
A	core\src\test\java\org\mskcc\cbio\portal\scripts\TestGenerateMutationData.java	5	1	-